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Champollion
Champollion

User Guide

  • Installation
  • Quickstart
  • Data Inputs
  • Integration Outputs
  • KeOps
  • Interpreting the Learned Matrix
  • Saving and Loading

Tutorials

  • Tutorials
    • RNA/ATAC integration tutorial
    • RNA/ADT interpretability tutorial

API Reference

  • API Reference
    • Model
    • Transport Results
    • Prior Utilities
    • Plotting Utilities
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TutorialsΒΆ

  • RNA/ATAC integration tutorial
  • RNA/ADT interpretability tutorial

The RNA-ATAC tutorial uses PCA representations as input and focuses on the quality of integration for unpaired cells. The RNA-ADT tutorial uses normalized gene and protein expression features and focuses on interpreting the learned A matrix.

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RNA/ATAC integration tutorial
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